Job ad: Scientific Data Management Specialist

The following excerpt from an ad for Scientific Data Management Specialist suggests it bodes well for the prospects of this (relatively) nascent profession:
Processing, soliciting, and providing assistance with data submissions for scientific data from genome sequencing and genotyping experiments into existing databases , analysis pipelines and associated data flows. Developing and improving the infrastructure supporting these systems.

Required Skills
  • Formal Education PhD
  • Scripting experience in perl or related language
  • Experience with SQL
  • Experience with LINUX/UNIX
  • Ability to use Microsoft Excel and related applications
  • Proven record solving related problems
Desired Skills
  • Knowledge of genetics, especially human genetics
  • Experience with large data sets
  • XML/XSLT and related web based tools
  • Experience with array data, especially expression or genotyping data
  • C/C++
  • Experience with grid computing (LSF,SunGrid, etc.)
  • QA filtering of genotype data (HWE, non-Mendelian segregation)
  • Experience with the NCBI dbSNP or dbGaP databases
  • Experience with the NCBI Trace or GenBank databases

Comments

Post a Comment

Popular posts from this blog

Java, MySql increased performance with Huge Pages

[Resources updates: 2010.07.07 , 2009.11.03 , 2009.05.27 ] Long running, large memory, high performant applications often have special needs with respect to their memory management. On Linux, Solaris and other modern OSes, the translation look-aside buffer ( TLB ) - whose page size of 4k for many CPUs/OSes - becomes a scalability issue in these extreme conditions. In order to get around TLB scalability issues, huge page sizes are used to reduce the impact on performance. This can be of use to installations with large scale Java, MySql and other large memory applications. 300% improvement : " Well, in my case, I was able to achieve an over 3x improvement in my EJB 3 application, of which fully 60 to 70% of that was due to using large page memory with a 3.5GB heap. Now, a 3.5GB heap without the large memory pages didn't provide any benefit over smaller heaps without large pages. Besides the throughput improvements, I also noticed that GC frequency was cut down by two-third
Read more

IBM on Linux: "Lean, clean, and green"

IBM developerWorks has an article ( Linux: Lean, clean, and green: How GNU/Linux is becoming more eco-friendly - 26 May 2009) which examines some of the Green benefits of the Linux operating system. It focuses primarily on the low resource demands Linux has on systems (as well as its support for older systems), thus extending the life of machines that would otherwise be junked. Also discussed is virtualization and aspects of the Linux OS that reduce power consumption in servers. Additional Green Linux and Open Source resource: LessWatts.org - Saving Power on Intel systems with Linux Ten ways Linux can turn you green . 2009 Green Computing With Open Source Software . 2009 Open Source is Already Naturally Green: Fewer Lawyers, Fewer Showers, More Real People Add Up to Big Green Wins . 2009 Is Linux the Greenest Operating System . 2009 Go Green, Save Green with Linux . 2008 Linux captures the 'green' flag, beats Windows 2008 power-saving measures 2008 Canadian Green Party
Read more

Mars Inc. Cacao Genome Database claims Open Access, public domain: falls short

This initially looked very promising: Mars , along with a number of collaborators (USDA, IBM, Clemson University Genomics Institute; Public Intellectual Property Resource for Agriculture at the University of California-Davis; National Center for Genome Resources; Center for Genomics and Bioinformatics at Indiana University; HudsonAlpha Institute for Biotechnology; and Washington State University), have sequenced the cacao genome and released it "Open Access" and "public domain" for the benefit of all, at a site called the Cacao Genome Project : McLean, VA –Today, Mars, Incorporated, the U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS), and IBM released the preliminary findings of their breakthrough cacao genome sequence and made it available in the public domain . - From the Mars Inc. press release 15 September 2010 A quote from the Independent article on the release ( First rice, then wheat – now cocoa genome unravelled 15 Sep 2010) f
Read more