Wednesday, August 20, 2008

Cyberinfrastructure for biological sciences

This paper takes a more semantic web and forward looking view than recent cyberinfrastructure articles:

  • Stein, L. D. (2008).Towards a cyberinfrastructure for the biological
    sciences: progress, visions and challenges Nat Rev Genet, 9(9), 678-688. DOI: 10.1038/nrg2414

Things like Semantic Web Pipes - missing from the article - can be found on the wiki page for the article (Thanks Matthias Samwald).

Related recent articles:
  • Goble, C., Stevens, R. (2008). State of the nation in data integration for bioinformatics. Journal of Biomedical Informatics DOI: 10.1016/j.jbi.2008.01.008

  • Stockinger, H., Attwood, T., Chohan, S.N., Cote, R., Cudre-Mauroux, P., Falquet, L., Fernandes, P., Finn, R.D., Hupponen, T., Korpelainen, E., Labarga, A., Laugraud, A., Lima, T., Pafilis, E., Pagni, M., Pettifer, S., Phan, I., Rahman, N. (2008). Experience using web services for biological sequence analysis. Briefings in Bioinformatics DOI: 10.1093/bib/bbn029

  • Garciasanchez, F., Fernandezbreis, J., Valenciagarcia, R., Gomez, J., Martinezbejar, R. (2008). Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources. Journal of Biomedical Informatics DOI: 10.1016/j.jbi.2008.05.007

  • Belleau, F., Nolin, M., Tourigny, N., Rigault, P., Morissette, J. (2008). Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. Journal of Biomedical Informatics DOI: 10.1016/j.jbi.2008.03.004

  • Sagotsky, J.A., Zhang, L., Wang, Z., Martin, S., Deisboeck, T.S. (2008). Life Sciences and the web: a new era for collaboration. Molecular Systems Biology, 4 DOI: 10.1038/msb.2008.39

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